Scientific Computer Software

300 Words | Approximately 2 Minutes Read | Last Modified on August 1, 2018

Companion software for journal publications

The following is a selected collection of software I have developed & co-developed over the years, in the fields of statistics, statistical genetics and computational biology. Most of them are on github.

Year Program Description
2018 susieR Sum of single effect model for large scale Bayesian regression
2017-2018 mashr Multivariate Adaptive Shrinkage in R
2016-2018 PFA An R package for paired factor model
2016-2018 DSC Dynamic Statistical Comparisons
2016-2018 SoS Script of Scripts
2015 eQtlBma Joint eQTL analysis for large number of subgroups via Bayesian model averaging
2013-2014 SEQLinkage A method to perform Linkage analysis using next-generation sequence data
2013-2014 RarePedSim Simulation of DNA sequence data of human pedigrees with complex traits
2012-2013 SEQPower Sample size and power calculation of rare variants association study designs
2012-2014 Variant Association Tools Quality control and association testing of next-generation sequence data
2012 Variant Annotation Tools Annotation and filtering of variants in human genome
2011 KBAC Package An R package implementing the KBAC statistic for rare variant association test

Software for production

Software lists

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